Alexey A. Sergushichev
Bioinformatics PhD candidate
I’m a final-year bioinformatics PhD student at ITMO University, Saint Petersburg, Russia. I’m working on computational methods for gene expression analysis with a specific focus on metabolic networks.
ITMO University Researcher at Computer Technologies Laboratory
Washington University in St. Louis Visiting researcher at Maxim Artyomov’s laboratory
ITMO University Bioinformatics PhD (supervisors: Maxim Artyomov and Anatoly Shalyto)
ITMO University MSc with honors in Computer Science
ITMO University BSc with honors in Computer Science
An algorithm for fast preranked gene set enrichment analysis using cumulative statistic calculation.
AA Loboda, MN Artyomov, AA Sergushichev. Solving generalized maximum-weight connected subgraph problem for network enrichment analysis. Preprint, accepted to WABI 2016, arXiv:1605.02168.
AA Sergushichev et al. GAM: a web-service for integrated transcriptional and metabolic network analysis. Nucleic Acids Research, doi:10.1093/nar/gkw266
EE Vincent, A Sergushichev et al.
Mitochondrial Phosphoenolpyruvate Carboxykinase Regulates Metabolic Adaptation and Enables Glucose-Independent Tumor Growth.
Molecular cell, doi:10.1016/j.molcel.2015.08.013
AK Jha, SCC Huang, A Sergushichev et al. Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization. Immunity, doi:10.1016/j.immuni.2015.02.005
AV Aleksandrov, SV Kazakov, AA Sergushichev, FN Tsarev, AA Shalyto The use of evolutionary programming based on training examples for the generation of finite state machines for controlling objects with complex behavior. Journal of Computer and Systems Sciences International, doi:10.1134/S1064230713020020
A Alexandrov, A Sergushichev, S Kazakov, F Tsarev.
Genetic algorithm for induction of finite automata with continuous and discrete output actions.
Proceedings of the 13th annual conference companion on Genetic and evolutionary computation, doi:10.1145/2001858.2002089